Mikhail Kolmogorov
Mikhail Kolmogorov
Stadtman Investigator, National Cancer Institute, NIH
Verified email at - Homepage
Cited by
Cited by
Assembly of long, error-prone reads using repeat graphs
M Kolmogorov, J Yuan, Y Lin, PA Pevzner
Nature biotechnology 37 (5), 540-546, 2019
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
metaFlye: scalable long-read metagenome assembly using repeat graphs
M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ...
Nature Methods, 1-8, 2020
Assembly of long error-prone reads using de Bruijn graphs
Y Lin, J Yuan, M Kolmogorov, MW Shen, M Chaisson, PA Pevzner
Proceedings of the National Academy of Sciences 113 (52), E8396-E8405, 2016
Ragout—a reference-assisted assembly tool for bacterial genomes
M Kolmogorov, B Raney, B Paten, S Pham
Bioinformatics 30 (12), i302-i309, 2014
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ...
Nature Genetics, 1, 2018
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
Nature methods 18 (11), 1322-1332, 2021
Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes
I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham
Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ...
Nature biotechnology 40 (5), 711-719, 2022
High-quality genome sequences of uncultured microbes by assembly of read clouds
A Bishara, EL Moss, M Kolmogorov, AE Parada, Z Weng, A Sidow, ...
Nature biotechnology 36 (11), 1067-1075, 2018
Chromosome assembly of large and complex genomes using multiple references
M Kolmogorov, J Armstrong, BJ Raney, I Streeter, M Dunn, F Yang, ...
Genome research 28 (11), 1720-1732, 2018
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
D Thybert, M Roller, FCP Navarro, I Fiddes, I Streeter, C Feig, ...
Genome research 28 (4), 448-459, 2018
Single-molecule protein identification by sub-nanopore sensors
M Kolmogorov, E Kennedy, Z Dong, G Timp, PA Pevzner
PLoS computational biology 13 (5), e1005356, 2017
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner
Nature biotechnology 40 (7), 1075-1081, 2022
Assembly Graph Browser: interactive visualization of assembly graphs
A Mikheenko, M Kolmogorov
Bioinformatics 35 (18), 3476-3478, 2019
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation
M Kolmogorov, KJ Billingsley, M Mastoras, M Meredith, J Monlong, ...
Nature Methods 20 (10), 1483-1492, 2023
SpectroGene: a tool for proteogenomic annotations using top-down spectra
M Kolmogorov, X Liu, PA Pevzner
Journal of proteome research 15 (1), 144-151, 2016
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
D Antipov, M Rayko, M Kolmogorov, PA Pevzner
Genome Biology 23 (1), 1-21, 2022
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