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Yifeng Tao
Yifeng Tao
Quantitative Researcher at Citadel Securities
Bestätigte E-Mail-Adresse bei cs.cmu.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
Y Tao, C Cai, WW Cohen, X Lu
Pacific Symposium on Biocomputing 25, 79-90, 2020
242020
Automatic human-like mining and constructing reliable genetic association database with deep reinforcement learning
H Wang, X Liu, Y Tao, W Ye, Q Jin, WW Cohen, EP Xing
Pacific Symposium on Biocomputing 24, 112-123, 2019
132019
Effective feature representation for clinical text concept extraction
Y Tao, B Godefroy, G Genthial, C Potts
Proceedings of the Clinical Natural Language Processing Workshop, 1-14, 2019
112019
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data
H Lei, EM Gertz, AA Schäffer, X Fu, Y Tao, K Heselmeyer-Haddad, ...
Bioinformatics 37 (24), 4704-4711, 2021
102021
Predicting drug sensitivity of cancer cell lines via collaborative filtering with contextual attention
Y Tao, S Ren, MQ Ding, R Schwartz, X Lu
Proceedings of Machine Learning Research 126, 660-684, 2020
92020
Interpretable deep learning for chromatin-informed inference of transcriptional programs driven by somatic alterations across cancers
Y Tao, X Ma, D Palmer, R Schwartz, X Lu, HU Osmanbeyoglu
Nucleic Acids Research 50 (19), 10869-10881, 2022
72022
Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis
Y Tao, H Lei, X Fu, AV Lee, J Ma, R Schwartz
Bioinformatics 36 (Supplement_1), i407-i416, 2020
72020
De novo prediction of cell-drug sensitivities using deep learning-based graph regularized matrix factorization
S Ren, Y Tao, K Yu, Y Xue, R Schwartz, X Lu
Pacific Symposium on Biocomputing 27, 278-289, 2022
62022
Improving personalized prediction of cancer prognoses with clonal evolution models
Y Tao, A Rajaraman, X Cui, Z Cui, J Eaton, H Kim, J Ma, R Schwartz
bioRxiv, 761510, 2019
62019
Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations
X Fu, H Lei, Y Tao, R Schwartz
Bioinformatics 38 (Supplement_1), i125-i133, 2022
52022
Phylogenies derived from matched transcriptome reveal the evolution of cell populations and temporal order of perturbed pathways in breast cancer brain metastases
Y Tao, H Lei, AV Lee, J Ma, R Schwartz
Mathematical and Computational Oncology: First International Symposium …, 2019
52019
Neural network deconvolution method for resolving pathway-level progression of tumor clonal expression programs with application to breast cancer brain metastases
Y Tao, H Lei, AV Lee, J Ma, R Schwartz
Frontiers in physiology 11, 531613, 2020
42020
Joint clustering of single-cell sequencing and fluorescence in situ hybridization data for reconstructing clonal heterogeneity in cancers
X Fu, H Lei, Y Tao, K Heselmeyer-Haddad, I Torres, M Dean, T Ried, ...
Journal of Computational Biology 28 (11), 1035-1051, 2021
22021
Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer
H Lei, XA Guo, Y Tao, K Ding, X Fu, S Oesterreich, AV Lee, R Schwartz
Bioinformatics 38 (Supplement_1), i386-i394, 2022
12022
Assessing the contribution of tumor mutational phenotypes to cancer progression risk
Y Tao, A Rajaraman, X Cui, Z Cui, H Chen, Y Zhao, J Eaton, H Kim, J Ma, ...
PLoS computational biology 17 (3), e1008777, 2021
12021
Machine learning applications in cancer genomics
O El-Charif, R Schwartz, Y Yuan, Y Tao
Machine Learning and Artificial Intelligence in Radiation Oncology, 41-72, 2024
2024
Improved deconvolution of combined bulk and single-cell RNA-sequencing data
H Lei, XA Guo, Y Tao, K Ding, X Fu, S Oesterreich, AV Lee, R Schwartz
Cancer Research 82 (12_Supplement), 5031-5031, 2022
2022
Genome-driven personalized medicine of cancer via machine learning and phylogenetic models
Y Tao
Carnegie Mellon University, 2021
2021
Theses by Author
A ALAVI, S BANG, TE BUCK, SA CHOWDHURY, LP COELHO, ...
AHMED, Amr CMU-CB-09-101 ALAVI, Amir CMU-CB-21-102 ARNOLD, Andrew CMU-CB-09-101 BANG, Seojin CMU-CB-20-100
TE BUCK, SA CHOWDHURY, LP COELHO, W COHEN, RE CURTIS, ...
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