TopPIC: A software tool for top-down mass spectrometry-based proteoform identification and characterization Q Kou, L Xun, X Liu Bioinformatics 32 (22), 3495-3497, 2016 | 227 | 2016 |
Identification and Quantification of Proteoforms by Mass Spectrometry LV Schaffer, RJ Millikin, RM Miller, LC Anderson, RT Fellers, Y Ge, ... Proteomics 19 (10), 1800361, 2019 | 212 | 2019 |
Computing the maximum similarity bi-clusters of gene expression data X Liu, L Wang Bioinformatics 23 (1), 50-56, 2007 | 206 | 2007 |
Deconvolution and Database Search of Complex Tandem Mass Spectra of Intact Proteins: A Combinatorial Approach X Liu, Y Inbar, PC Dorrestein, C Wynne, N Edwards, P Souda, ... Molecular & Cellular Proteomics 9 (12), 2772-2782, 2010 | 191 | 2010 |
Protein identification using top-down spectra X Liu, Y Sirotkin, Y Shen, G Anderson, YS Tsai, YS Ting, DR Goodlett, ... Molecular & Cellular Proteomics 11 (6), 2012 | 178 | 2012 |
Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions C Ansong, S Wu, D Meng, X Liu, HM Brewer, BL Deatherage Kaiser, ... Proceedings of the National Academy of Sciences 110 (25), 10153-10158, 2013 | 169 | 2013 |
MASH Suite Pro: a comprehensive software tool for top-down proteomics W Cai, H Guner, ZR Gregorich, AJ Chen, S Ayaz-Guner, Y Peng, ... Molecular & Cellular Proteomics 15 (2), 703-714, 2016 | 145 | 2016 |
Top-down proteomics reveals concerted reductions in myofilament and Z-disc protein phosphorylation after acute myocardial infarction Y Peng, ZR Gregorich, SG Valeja, H Zhang, W Cai, YC Chen, H Guner, ... Molecular & Cellular Proteomics 13 (10), 2752-2764, 2014 | 118 | 2014 |
Deep Top-Down Proteomics Using Capillary Zone Electrophoresis-Tandem Mass Spectrometry: Identification of 5700 Proteoforms from the Escherichia coli Proteome EN McCool, RA Lubeckyj, X Shen, D Chen, Q Kou, X Liu, L Sun Analytical chemistry 90 (9), 5529-5533, 2018 | 114 | 2018 |
Single-shot top-down proteomics with capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry for identification of nearly 600 Escherichia coli proteoforms RA Lubeckyj, EN McCool, X Shen, Q Kou, X Liu, L Sun Analytical chemistry 89 (22), 12059-12067, 2017 | 93 | 2017 |
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery A Ibrahim, L Yang, C Johnston, X Liu, B Ma, NA Magarvey Proceedings of the National Academy of Sciences 109 (47), 19196-19201, 2012 | 82 | 2012 |
MASH explorer: A universal software environment for top-down proteomics Z Wu, DS Roberts, JA Melby, K Wenger, M Wetzel, Y Gu, SG Ramanathan, ... Journal of proteome research 19 (9), 3867-3876, 2020 | 79 | 2020 |
De novo protein sequencing by combining top-down and bottom-up tandem mass spectra X Liu, LJM Dekker, S Wu, M VanDuijn, TM Luider, N Tolić, Q Kou, ... Journal of proteome research 13 (7), 3241–3248, 2014 | 74 | 2014 |
Improving protein order-disorder classification using charge-hydropathy plots F Huang, CJ Oldfield, B Xue, WL Hsu, J Meng, X Liu, L Shen, P Romero, ... BMC bioinformatics 15 (Suppl 17), S4, 2014 | 72 | 2014 |
Native Proteomics in Discovery Mode Using Size-Exclusion Chromatography–Capillary Zone Electrophoresis–Tandem Mass Spectrometry X Shen, Q Kou, R Guo, Z Yang, D Chen, X Liu, H Hong, L Sun Analytical chemistry 90 (17), 10095-10099, 2018 | 71 | 2018 |
Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field Orbitrap mass spectrometer L Fornelli, D Ayoub, K Aizikov, X Liu, E Damoc, PA Pevzner, A Makarov, ... Journal of Proteomics 159, 67-76, 2017 | 65 | 2017 |
Quantitative analysis of human salivary gland‐derived intact proteome using top‐down mass spectrometry S Wu, JN Brown, N Tolić, D Meng, X Liu, H Zhang, R Zhao, RJ Moore, ... Proteomics 14 (10), 1211-1222, 2014 | 63 | 2014 |
Deepm5C: a deep-learning-based hybrid framework for identifying human RNA N5-methylcytosine sites using a stacking strategy MM Hasan, S Tsukiyama, JY Cho, H Kurata, MA Alam, X Liu, ... Molecular Therapy 30 (8), 2856-2867, 2022 | 58 | 2022 |
Identification of ultramodified proteins using top-down tandem mass spectra X Liu, S Hengel, S Wu, N Tolić, L Pasa-Tolic, PA Pevzner Journal of proteome research 12 (12), 5830-5838, 2013 | 56 | 2013 |
Large-scale qualitative and quantitative top-down proteomics using capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry with nanograms of proteome … RA Lubeckyj, AR Basharat, X Shen, X Liu, L Sun Journal of The American Society for Mass Spectrometry 30 (8), 1435-1445, 2019 | 55 | 2019 |