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Sridhar Hannenhalli
Sridhar Hannenhalli
Senior Investigator, Cancer Data Science Lab, National Cancer Institute. NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
199792001
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
S Hannenhalli, PA Pevzner
Journal of the ACM (JACM) 46 (1), 1-27, 1999
12061999
The evolution of Fox genes and their role in development and disease
S Hannenhalli, KH Kaestner
Nature Reviews Genetics 10 (4), 233-240, 2009
7512009
Genome-wide analysis of retroviral DNA integration
F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ...
Nature reviews microbiology 3 (11), 848-858, 2005
5302005
Transforming men into mice (polynomial algorithm for genomic distance problem)
S Hannenhalli, PA Pevzner
Proceedings of IEEE 36th annual foundations of computer science, 581-592, 1995
4931995
Retroviral DNA integration: viral and cellular determinants of target-site selection
MK Lewinski, M Yamashita, M Emerman, A Ciuffi, H Marshall, G Crawford, ...
PLoS pathogens 2 (6), e60, 2006
4732006
Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ...
Journal of virology 79 (11), 6610-6619, 2005
3352005
Analysis and prediction of functional sub-types from protein sequence alignments
SS Hannenhalli, RB Russell
Journal of molecular biology 303 (1), 61-76, 2000
3322000
Whole-genome shotgun assembly and comparison of human genome assemblies
S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ...
Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004
2692004
RNA-Seq identifies novel myocardial gene expression signatures of heart failure
Y Liu, M Morley, J Brandimarto, S Hannenhalli, Y Hu, EA Ashley, ...
Genomics 105 (2), 83-89, 2015
2602015
Selection of target sites for mobile DNA integration in the human genome
C Berry, S Hannenhalli, J Leipzig, FD Bushman
PLoS computational biology 2 (11), e157, 2006
2492006
375-Approximation Algorithm for Sorting by Reversals
P Berman, S Hannenhalli, M Karpinski
European Symposium on Algorithms, 200-210, 2002
2462002
Polynomial-time algorithm for computing translocation distance between genomes
S Hannenhalli
Discrete applied mathematics 71 (1-3), 137-151, 1996
2351996
Transcriptional genomics associates FOX transcription factors with human heart failure
S Hannenhalli, ME Putt, JM Gilmore, J Wang, MS Parmacek, JA Epstein, ...
Circulation 114 (12), 1269-1276, 2006
2342006
Fast sorting by reversal
P Berman, S Hannenhalli
Annual Symposium on Combinatorial Pattern Matching, 168-185, 1996
2051996
Urea cycle dysregulation generates clinically relevant genomic and biochemical signatures
JS Lee, L Adler, H Karathia, N Carmel, S Rabinovich, N Auslander, ...
Cell 174 (6), 1559-1570. e22, 2018
1992018
Why transcription factor binding sites are ten nucleotides long
AJ Stewart, S Hannenhalli, JB Plotkin
Genetics 192 (3), 973-985, 2012
1872012
Genome sequence comparison and scenarios for gene rearrangements: A test case
S Hannenhalli, C Chappey, EV Koonin, PA Pevzner
Genomics 30 (2), 299-311, 1995
1771995
Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation
CM Trivedi, W Zhu, Q Wang, C Jia, HJ Kee, L Li, S Hannenhalli, ...
Developmental cell 19 (3), 450-459, 2010
1702010
Promoter prediction in the human genome
S Hannenhalli, S Levy
Bioinformatics 17 (suppl_1), S90-S96, 2001
1622001
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