| Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling S Li, SM Assmann, R Albert PLoS biology 4 (10), e312, 2006 | 523 | 2006 |
| Boolean network simulations for life scientists I Albert, J Thakar, S Li, R Zhang, R Albert Source code for biology and medicine 3, 1-8, 2008 | 382 | 2008 |
| High-resolution expression map of the Arabidopsis root reveals alternative splicing and lincRNA regulation S Li, M Yamada, X Han, U Ohler, PN Benfey Developmental cell 39 (4), 508-522, 2016 | 287 | 2016 |
| Soil bacterial and fungal communities show distinct recovery patterns during forest ecosystem restoration S Sun, S Li, BN Avera, BD Strahm, BD Badgley Applied and Environmental Microbiology 83 (14), e00966-17, 2017 | 239 | 2017 |
| Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells RS Wang, S Pandey, S Li, TE Gookin, Z Zhao, R Albert, SM Assmann BMC genomics 12, 1-24, 2011 | 220 | 2011 |
| Multilevel regulation of abiotic stress responses in plants DC Haak, T Fukao, R Grene, Z Hua, R Ivanov, G Perrella, S Li Frontiers in plant science 8, 1564, 2017 | 193 | 2017 |
| Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G‐protein action S Pandey, RS Wang, L Wilson, S Li, Z Zhao, TE Gookin, SM Assmann, ... Molecular systems biology 6 (1), 372, 2010 | 153 | 2010 |
| Paired-End Analysis of Transcription Start Sites in Arabidopsis Reveals Plant-Specific Promoter Signatures T Morton, J Petricka, DL Corcoran, S Li, CM Winter, A Carda, PN Benfey, ... The Plant Cell 26 (7), 2746-2760, 2014 | 141 | 2014 |
| Antibiotics ameliorate lupus-like symptoms in mice Q Mu, VJ Tavella, JL Kirby, TE Cecere, M Chung, J Lee, S Li, SA Ahmed, ... Scientific reports 7 (1), 13675, 2017 | 118 | 2017 |
| DeepTE: a computational method for de novo classification of transposons with convolutional neural network H Yan, A Bombarely, S Li Bioinformatics 36 (15), 4269-4275, 2020 | 95 | 2020 |
| Obtaining and analysis of flanking sequences from T-DNA transformants of Arabidopsis G Qin, D Kang, Y Dong, Y Shen, L Zhang, X Deng, Y Zhang, S Li, N Chen, ... Plant Science 165 (5), 941-949, 2003 | 88 | 2003 |
| Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data S Li, LM Liberman, N Mukherjee, PN Benfey, U Ohler Genome research 23 (10), 1730-1739, 2013 | 70 | 2013 |
| Establishment of expression in the SHORTROOT-SCARECROW transcriptional cascade through opposing activities of both activators and repressors EE Sparks, C Drapek, A Gaudinier, S Li, M Ansariola, N Shen, ... Developmental Cell 39 (5), 585-596, 2016 | 64 | 2016 |
| A machine learning approach to predict gene regulatory networks in seed development in Arabidopsis Y Ni, D Aghamirzaie, H Elmarakeby, E Collakova, S Li, R Grene, ... Frontiers in plant science 7, 1936, 2016 | 63 | 2016 |
| Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets TA Farazi, CS Leonhardt, N Mukherjee, A Mihailovic, S Li, KEA Max, ... Rna 20 (7), 1090-1102, 2014 | 62 | 2014 |
| Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem JR Wendrich, BK Möller, S Li, S Saiga, R Sozzani, PN Benfey, B De Rybel, ... Proceedings of the National Academy of Sciences 114 (42), E8922-E8929, 2017 | 53 | 2017 |
| Overlapping and stress‐specific transcriptomic and hormonal responses to flooding and drought in soybean BG Tamang, S Li, D Rajasundaram, S Lamichhane, T Fukao The Plant Journal 107 (1), 100-117, 2021 | 48 | 2021 |
| Genome wide association study and genomic selection of amino acid concentrations in soybean seeds J Qin, A Shi, Q Song, S Li, F Wang, Y Cao, W Ravelombola, Q Song, ... Frontiers in Plant Science 10, 1445, 2019 | 45 | 2019 |
| Cyberbiosecurity challenges of pathogen genome databases BA Vinatzer, LS Heath, HMJ Almohri, MJ Stulberg, C Lowe, S Li Frontiers in bioengineering and biotechnology 7, 106, 2019 | 42 | 2019 |
| Genome-wide association mapping of resistance to Phytophthora sojae in a soybean [Glycine max (L.) Merr.] germplasm panel from maturity groups IV and V J Qin, Q Song, A Shi, S Li, M Zhang, B Zhang PLoS One 12 (9), e0184613, 2017 | 41 | 2017 |
