| Common principles and best practices for engineering microbiomes CE Lawson, WR Harcombe, R Hatzenpichler, SR Lindemann, FE Löffler, ... Nature Reviews Microbiology 17 (12), 725-741, 2019 | 455 | 2019 |
| Deciphering microbial interactions in synthetic human gut microbiome communities OS Venturelli, AV Carr, G Fisher, RH Hsu, R Lau, BP Bowen, S Hromada, ... Molecular systems biology 14 (6), e8157, 2018 | 451 | 2018 |
| The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor VM Renault, PU Thekkat, KL Hoang, JL White, CA Brady, ... Oncogene 30 (29), 3207-3221, 2011 | 152 | 2011 |
| Design of synthetic human gut microbiome assembly and butyrate production RL Clark, BM Connors, DM Stevenson, SE Hromada, JJ Hamilton, ... Nature communications 12 (1), 3254, 2021 | 136 | 2021 |
| Evolution favors protein mutational robustness in sufficiently large populations JD Bloom, Z Lu, D Chen, A Raval, OS Venturelli, FH Arnold BMC biology 5, 1-21, 2007 | 133 | 2007 |
| Population diversification in a yeast metabolic program promotes anticipation of environmental shifts OS Venturelli, I Zuleta, RM Murray, H El-Samad PLoS biology 13 (1), e1002042, 2015 | 122 | 2015 |
| EcoFABs: advancing microbiome science through standardized fabricated ecosystems K Zengler, K Hofmockel, NS Baliga, SW Behie, HC Bernstein, JB Brown, ... Nature methods 16 (7), 567-571, 2019 | 119 | 2019 |
| Microbial Interaction Network Inference in Microfluidic Droplets RH Hsu, RL Clark, JW Tan, JC Ahn, S Gupta, PA Romero, OS Venturelli Cell systems 9 (3), 229-242. e4, 2019 | 109 | 2019 |
| Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response OS Venturelli, H El-Samad, RM Murray Proceedings of the National Academy of Sciences 109 (48), E3324-E3333, 2012 | 94 | 2012 |
| Investigating the dynamics of microbial consortia in spatially structured environments S Gupta, TD Ross, MM Gomez, JL Grant, PA Romero, OS Venturelli Nature communications 11 (1), 2418, 2020 | 83 | 2020 |
| Polysaccharide utilization loci in Bacteroides determine population fitness and community-level interactions J Feng, Y Qian, Z Zhou, S Ertmer, EI Vivas, F Lan, JJ Hamilton, FE Rey, ... Cell host & microbe 30 (2), 200-215. e12, 2022 | 67 | 2022 |
| Programming mRNA decay to modulate synthetic circuit resource allocation OS Venturelli, M Tei, S Bauer, LJG Chan, CJ Petzold, AP Arkin Nature Communications 8 (1), 15128, 2017 | 54 | 2017 |
| Negative interactions determine Clostridioides difficile growth in synthetic human gut communities S Hromada, Y Qian, TB Jacobson, RL Clark, L Watson, N Safdar, ... Molecular systems biology 17 (10), e10355, 2021 | 44 | 2021 |
| Towards a deeper understanding of microbial communities: integrating experimental data with dynamic models Y Qian, F Lan, OS Venturelli Current opinion in microbiology 62, 84-92, 2021 | 42 | 2021 |
| Towards engineering biological systems in a broader context OS Venturelli, RG Egbert, AP Arkin Journal of molecular biology 428 (5), 928-944, 2016 | 42 | 2016 |
| Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics M Baranwal, RL Clark, J Thompson, Z Sun, AO Hero, O Venturelli Elife, 0 | 37* | |
| Integrating systems and synthetic biology to understand and engineer microbiomes PA Leggieri, Y Liu, M Hayes, B Connors, S Seppälä, MA O'Malley, ... Annual Review of Biomedical Engineering 23 (1), 169-201, 2021 | 35 | 2021 |
| Understanding and engineering distributed biochemical pathways in microbial communities X Cao, JJ Hamilton, OS Venturelli Biochemistry 58 (2), 94-107, 2018 | 32 | 2018 |
| Scalable nonlinear programming framework for parameter estimation in dynamic biological system models S Shin, OS Venturelli, VM Zavala PLoS computational biology 15 (3), e1006828, 2019 | 22 | 2019 |
| Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions JC Thompson, VM Zavala, OS Venturelli PLOS Computational Biology 19 (9), e1011436, 2023 | 17 | 2023 |
Ryan Hon HsuSalk Institute for Biological Science / University of California, San DiegoBestätigte E-Mail-Adresse bei health.ucsd.edu
