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Salim Akhter Chowdhury
Salim Akhter Chowdhury
Flatiron Institute, Princeton University
Bestätigte E-Mail-Adresse bei princeton.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Single-cell genetic analysis of ductal carcinoma in situ and invasive breast cancer reveals enormous tumor heterogeneity yet conserved genomic imbalances and gain of MYC during …
K Heselmeyer-Haddad, LYB Garcia, A Bradley, C Ortiz-Melendez, WJ Lee, ...
The American journal of pathology 181 (5), 1807-1822, 2012
1342012
Protein–protein interaction networks and subnetworks in the biology of disease
RK Nibbe, SA Chowdhury, M Koyutürk, R Ewing, MR Chance
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (3), 357-367, 2011
1012011
Subnetwork state functions define dysregulated subnetworks in cancer
SA Chowdhury, RK Nibbe, MR Chance, M Koyutürk
Journal of Computational Biology 18 (3), 263-281, 2011
852011
Network signatures of survival in glioblastoma multiforme
VN Patel, G Gokulrangan, SA Chowdhury, Y Chen, AE Sloan, M Koyutürk, ...
PLoS computational biology 9 (9), e1003237, 2013
772013
Identification of coordinately dysregulated subnetworks in complex phenotypes
SA Chowdhury, M Koyutürk
Pacific Symposium on Biocomputing, 2010, 2010
632010
Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics
SA Chowdhury, SE Shackney, K Heselmeyer-Haddad, T Ried, ...
PLoS computational biology 10 (7), e1003740, 2014
582014
Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations
SA Chowdhury, SE Shackney, K Heselmeyer-Haddad, T Ried, ...
Bioinformatics 29 (13), i189-i198, 2013
582013
Single-cell genetic analysis reveals insights into clonal development of prostate cancers and indicates loss of PTEN as a marker of poor prognosis
KM Heselmeyer-Haddad, LYB Garcia, A Bradley, L Hernandez, Y Hu, ...
The American journal of pathology 184 (10), 2671-2686, 2014
392014
Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea
Y Liu, S Patel, R Nibbe, S Maxwell, SA Chowdhury, M Koyuturk, X Zhu, ...
Biocomputing 2011, 14-25, 2011
392011
Inferring models of multiscale copy number evolution for single-tumor phylogenetics
SA Chowdhury, EM Gertz, D Wangsa, K Heselmeyer-Haddad, T Ried, ...
Bioinformatics 31 (12), i258-i267, 2015
322015
Phylogenetic analysis of multiple FISH markers in oral tongue squamous cell carcinoma suggests that a diverse distribution of copy number changes is associated with poor prognosis
D Wangsa, SA Chowdhury, M Ryott, EM Gertz, G Elmberger, G Auer, ...
International journal of cancer 138 (1), 98-109, 2016
242016
A Novel Subset of Human Tumors That Simultaneously Overexpress Multiple E2F-responsive Genes Found in Breast, Ovarian, and Prostate Cancers
SE Shackney, SA Chowdhury, R Schwartz
Cancer Informatics 5, 89-100, 2014
202014
FISHtrees 3.0: tumor phylogenetics using a ploidy probe
EM Gertz, SA Chowdhury, WJ Lee, D Wangsa, K Heselmeyer-Haddad, ...
PLoS One 11 (6), e0158569, 2016
152016
Subnetwork state functions define dysregulated subnetworks in cancer
SA Chowdhury, RK Nibbe, MR Chance, M Koyutürk
Research in Computational Molecular Biology: 14th Annual International …, 2010
14*2010
An integrated approach to blood-based cancer diagnosis and biomarker discovery.
MR Min, S Chowdhury, Y Qi, A Stewart, R Ostroff
Pacific Symposium on Biocomputing, 2014, 2014
122014
Identifying stage-specific protein subnetworks for colorectal cancer
S Erten, SA Chowdhury, X Guan, RK Nibbe, JS Barnholtz-Sloan, ...
BMC proceedings 6, 1-12, 2012
82012
A new orchid from Kameng frontier district, NEFA, Assam
J Joseph, S Chowdhury
Journal of the Bombay Natural History Society 63, 54-56, 1966
41966
Knowledge-driven sparse learning approach to identifying interpretable high-order feature interactions for system output prediction
R Min, Y Qi, SA Chowdhury
US Patent App. 14/243,920, 2014
22014
Systems and methods of selecting combinatorial coordinately dysregulated biomarker subnetworks
M Koyuturk, M Chance, R Nibbe, SA Chowdhury
US Patent App. 13/642,777, 2014
22014
Single-cell genetic analysis reveals insights into clonal development of cervical cancer and confirms TERC as an early and dominant aberration
LS Hernandez, A Bradley, T Gaiser, S Andersson, EM Gertz, ...
Cancer Research 75 (15_Supplement), 4833-4833, 2015
2015
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