Rob Edwards

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Forest RohwerSan Diego State UniversityVerified email at mail.sdsu.edu
Liz DinsdaleMatthew Flinders Fellow of Marine Biology, Professor, Flinders University, South AustraliaVerified email at flinders.edu.au
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Bioinformatics, Utrecht UniversityVerified email at uni-jena.de
Robert SchmiederSan Diego State UniversityVerified email at sciences.sdsu.edu
Katelyn McNairResearch Associate, San Diego State UniversityVerified email at mail.sdsu.edu
Rick StevensProfessor of Computer Science, University of ChicagoVerified email at ci.uchicago.edu
Robert OlsonArgonne National LaboratoryVerified email at mcs.anl.gov
Genivaldo Gueiros Z. SilvaSan Diego State UniversityVerified email at rohan.sdsu.edu
linda wegley kellyScripps Institution of Oceanography - UC San DiegoVerified email at ucsd.edu
Mya BreitbartUniversity of South FloridaVerified email at marine.usf.edu
Veronika VonsteinFellowship for Interpretation of GenomesVerified email at theFIG.info
Peter SalamonProfessor of Mathematics, San Diego State UniversityVerified email at sdsu.edu
Florent E AnglyGenomic data analyst, The University of QueenslandVerified email at uq.edu.au
Fabiano ThompsonFederal University of Rio de Janeiro (UFRJ)Verified email at biologia.ufrj.br
Gary J. OlsenProfessor of Microbiology, University of Illinois at Urbana-ChampaignVerified email at life.uiuc.edu
Ramy K. AzizProf., Microbiology & Immunology, Faculty of Pharmacy, Cairo University/ Head, MARC Biolabs, EgyptVerified email at pharma.cu.edu.eg
Yan Wei LimSan Diego State University, San Diego, CAVerified email at rohan.sdsu.edu
Gordon D PuschFellowship for Interpretation of GenomesVerified email at xnet.com
Anca Mara SegallProfessor of Biology, San Diego State UniversityVerified email at sdsu.edu
Beltran Rodriguez-MuellerVerified email at bayer.com

Rob Edwards

Matthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, Australia

Verified email at flinders.edu.au - Homepage

Metagenomics Microbial Genomics Bioinformatics Data Analysis


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The RAST Server: rapid annotations using subsystems technology R Aziz, D Bartels, A Best, M DeJongh, T Disz, R Edwards, K Formsma, ... BMC genomics 9 (1), 75, 2008	12094	2008
Quality control and preprocessing of metagenomic datasets R Schmieder, R Edwards Bioinformatics 27 (6), 863, 2011	5129	2011
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ... Nucleic acids research 42 (D1), D206-D214, 2014	4569	2014
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ... BMC bioinformatics 9 (1), 386, 2008	4057	2008
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ... Scientific reports 5 (1), 1-6, 2015	2514	2015
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005	2321	2005
Community genomics among stratified microbial assemblages in the ocean's interior EF DeLong, CM Preston, T Mincer, V Rich, SJ Hallam, NU Frigaard, ... Science 311 (5760), 496-503, 2006	1553	2006
The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541-547, 2008	1365	2008
The marine viromes of four oceanic regions FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, ... PLoS biology 4 (11), e368, 2006	1140	2006
Viral metagenomics RA Edwards, F Rohwer Nature Reviews Microbiology 3 (6), 504-510, 2005	1138	2005
Functional metagenomic profiling of nine biomes EA Dinsdale, RA Edwards, D Hall, F Angly, M Breitbart, JM Brulc, ... Nature 452 (7187), 629-632, 2008	1128	2008
Nitrogen control in bacteria MJ Merrick, RA Edwards Microbiological reviews 59 (4), 604-622, 1995	929	1995
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases JM Brulc, DA Antonopoulos, ME Berg Miller, MK Wilson, AC Yannarell, ... Proceedings of the National Academy of Sciences 106 (6), 1948-1953, 2009	866	2009
The Phage Proteomic Tree: a genome-based taxonomy for phage F Rohwer, R Edwards Journal of bacteriology 184 (16), 4529-4535, 2002	860	2002
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ... Nature communications 5 (1), 4498, 2014	829	2014
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets R Schmieder, R Edwards PLoS One 6 (3), e17288, 2011	792	2011
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017	779	2017
Metagenomic analysis of stressed coral holobionts RV Thurber, D Willner‐Hall, B Rodriguez‐Mueller, C Desnues, ... Environmental microbiology 11 (8), 2148-2163, 2009	712	2009
Metagenomic analysis of the microbial community associated with the coral Porites astreoides L Wegley, R Edwards, B Rodriguez‐Brito, H Liu, F Rohwer Environmental microbiology 9 (11), 2707-2719, 2007	667	2007
Improved allelic exchange vectors and their use to analyze 987P fimbria gene expression RA Edwards, LH Keller, DM Schifferli Gene 207 (2), 149-157, 1998	666	1998

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