Uri Keich
Uri Keich
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Finding motifs in the twilight zone
U Keich, PA Pevzner
Proceedings of the sixth annual international conference on Computational …, 2002
Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly …
HF Oliver, RH Orsi, L Ponnala, U Keich, W Wang, Q Sun, SW Cartinhour, ...
BMC genomics 10, 1-22, 2009
Designing seeds for similarity search in genomic DNA
J Buhler, U Keich, Y Sun
Proceedings of the seventh annual international conference on Research in …, 2003
Target-decoy approach and false discovery rate: when things may go wrong
N Gupta, N Bandeira, U Keich, PA Pevzner
Journal of the American Society for Mass Spectrometry 22, 1111-1120, 2011
On spaced seeds for similarity search
U Keich, M Li, B Ma, J Tromp
Discrete applied mathematics 138 (3), 253-263, 2004
Subtle motifs: defining the limits of motif finding algorithms
U Keich, PA Pevzner
Bioinformatics 18 (10), 1382-1390, 2002
Tandem mass spectrum identification via cascaded search
A Kertesz-Farkas, U Keich, WS Noble
Journal of proteome research 14 (8), 3027-3038, 2015
Improved false discovery rate estimation procedure for shotgun proteomics
U Keich, A Kertesz-Farkas, WS Noble
Journal of proteome research 14 (8), 3148-3161, 2015
High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast
I Liachko, RA Youngblood, U Keich, MJ Dunham
Genome research 23 (4), 698-704, 2013
Improved similarity scores for comparing motifs
E Tanaka, T Bailey, CE Grant, WS Noble, U Keich
Bioinformatics 27 (12), 1603-1609, 2011
A comprehensive genome-wide map of autonomously replicating sequences in a naive genome
I Liachko, A Bhaskar, C Lee, SCC Chung, BK Tye, U Keich
PLoS genetics 6 (5), e1000946, 2010
Computing the P-value of the information content from an alignment of multiple sequences
N Nagarajan, N Jones, U Keich
Bioinformatics 21 (suppl_1), i311-i318, 2005
Genome-wide analysis of bacterial promoter regions
E Eskin, U Keich, MS Gelfand, PA Pevzner
Biocomputing 2003, 29-40, 2002
On the importance of well-calibrated scores for identifying shotgun proteomics spectra
U Keich, WS Noble
Journal of proteome research 14 (2), 1147-1160, 2015
GIMSAN: a Gibbs motif finder with significance analysis
P Ng, U Keich
Bioinformatics 24 (19), 2256-2257, 2008
Averaging strategy to reduce variability in target-decoy estimates of false discovery rate
U Keich, K Tamura, WS Noble
Journal of proteome research 18 (2), 585-593, 2018
On Lp bounds for Kakeya maximal functions and the Minkowski dimension in ℝ2
U Keich
Bulletin of the London Mathematical Society 31 (2), 213-221, 1999
Novel features of ARS selection in budding yeast Lachancea kluyveri
I Liachko, E Tanaka, K Cox, SCC Chung, L Yang, A Seher, L Hallas, ...
BMC genomics 12, 1-18, 2011
Improving MEME via a two-tiered significance analysis
E Tanaka, TL Bailey, U Keich
Bioinformatics 30 (14), 1965-1973, 2014
A generalization of the Ahlswede-Daykin inequality
R Aharoni, U Keich
Discrete Mathematics 152 (1-3), 1-12, 1996
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