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Paweł Gniewek
Paweł Gniewek
Rezo Therapeutics
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Title
Cited by
Cited by
Year
Self-driven jamming in growing microbial populations
M Delarue, J Hartung, C Schreck, P Gniewek, L Hu, S Herminghaus, ...
Nature Physics, 2016
1472016
Multibody coarse‐grained potentials for native structure recognition and quality assessment of protein models
P Gniewek, SP Leelananda, A Kolinski, RL Jernigan, A Kloczkowski
Proteins: Structure, Function, and Bioinformatics 79 (6), 1923-1929, 2011
512011
Coarse-grained modeling of mucus barrier properties
P Gniewek, A Kolinski
Biophysical journal 102 (2), 195-200, 2012
312012
Elastic network normal modes provide a basis for protein structure refinement
P Gniewek, A Kolinski, RL Jernigan, A Kloczkowski
The Journal of Chemical Physics 136 (19), 2012
272012
Free energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models
MT Zimmermann, SP Leelananda, P Gniewek, Y Feng, RL Jernigan, ...
Journal of structural and functional genomics 12, 137-147, 2011
242011
BioShell-Threading: versatile Monte Carlo package for protein 3D threading
P Gniewek, A Kolinski, A Kloczkowski, D Gront
BMC bioinformatics 15, 1-8, 2014
212014
Coarse-grained Monte Carlo simulations of mucus: structure, dynamics, and thermodynamics
P Gniewek, A Kolinski
Biophysical journal 99 (11), 3507-3516, 2010
162010
Biomechanical feedback strengthens jammed cellular packings
P Gniewek, CF Schreck, O Hallatschek
Physical Review Letters 122 (20), 208102, 2019
15*2019
Statistical contact potentials in protein coarse-grained modeling: from pair to multi-body potentials
SP Leelananda, Y Feng, P Gniewek, A Kloczkowski, RL Jernigan
Multiscale Approaches to Protein Modeling: Structure Prediction, Dynamics …, 2011
142011
Instance segmentation of densely packed cells using a hybrid model of U-net and mask R-CNN
T Konopczyński, R Heiman, P Woźnicki, P Gniewek, MC Duvernoy, ...
Artificial Intelligence and Soft Computing: 19th International Conference …, 2020
102020
How noise in force fields can affect the structural refinement of protein models?
P Gniewek, A Kolinski, RL Jernigan, A Kloczkowski
Proteins: Structure, Function, and Bioinformatics 80 (2), 335-341, 2012
92012
An efficient graph generative model for navigating ultra-large combinatorial synthesis libraries
A Pedawi, P Gniewek, C Chang, B Anderson, H van den Bedem
Advances in Neural Information Processing Systems 35, 8731-8745, 2022
72022
Learning physics confers pose-sensitivity in structure-based virtual screening
P Gniewek, B Worley, K Stafford, H Bedem, B Anderson
NeurIPS 2021 Machine Learning in Structural Biology Workshop, 2021
72021
Fluid flow through packings of elastic shells
P Gniewek, O Hallatschek
Physical Review E 99 (2), 023103, 2019
62019
Optimization of profile-to-profile alignment parameters for one-dimensional threading
P Gniewek, A Kolinski, D Gront
Journal of Computational Biology 19 (7), 879-886, 2012
52012
Note: A simple picture of subdiffusive polymer motion from stochastic simulations
P Gniewek, A Kolinski
The Journal of chemical physics 134 (5), 2011
52011
Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos
AR Katebi, P Gniewek, M Zimmermann, S Saraswathi, Z Gong, CK Tuggle, ...
Proceedings of the First ACM International Conference on Bioinformatics and …, 2010
52010
AI is a viable alternative to high throughput screening: a 318-target study
Scientific reports 14 (1), 7526, 2024
32024
Mechanics of Confined Microbial Populations
P Gniewek
University of California, Berkeley, 2018
12018
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Articles 1–19