| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 23502 | 2012 |
| Using SPAdes de novo assembler A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov Current protocols in bioinformatics 70 (1), e102, 2020 | 1765 | 2020 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1218 | 2013 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 976 | 2018 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Annual International Conference on Research in Computational Molecular …, 2013 | 843 | 2013 |
| rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data E Bushmanova, D Antipov, A Lapidus, AD Prjibelski GigaScience 8 (9), giz100, 2019 | 625* | 2019 |
| A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ... Nature Communications 12 (1), 463, 2021 | 168 | 2021 |
| Icarus: visualizer for de novo assembly evaluation A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich Bioinformatics 32 (21), 3321-3323, 2016 | 138 | 2016 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 136 | 2014 |
| rnaQUAST: a quality assessment tool for de novo transcriptome assemblies E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski Bioinformatics 32 (14), 2210-2212, 2016 | 135 | 2016 |
| Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ... Nature biotechnology 40 (7), 1082-1092, 2022 | 88 | 2022 |
| Accurate isoform discovery with IsoQuant using long reads AD Prjibelski, A Mikheenko, A Joglekar, A Smetanin, J Jarroux, ... Nature Biotechnology 41 (7), 915-918, 2023 | 77 | 2023 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... Nature methods, 1-15, 2024 | 74 | 2024 |
| Assembling short reads from jumping libraries with large insert sizes I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner Bioinformatics 31 (20), 3262-3268, 2015 | 67 | 2015 |
| De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ... Cell Systems 10 (1), 99-108. e5, 2020 | 42 | 2020 |
| Extending rnaSPAdes functionality for hybrid transcriptome assembly AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ... BMC Bioinformatics 21 (302), 2020 | 37 | 2020 |
| Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish KA Demin, AM Lakstygal, NA Krotova, A Masharsky, N Tagawa, ... Scientific reports 10 (1), 19981, 2020 | 35 | 2020 |
| Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.) GD Puglia, AD Prjibelski, D Vitale, E Bushmanova, KJ Schmid, ... BMC genomics 21 (1), 1-17, 2020 | 27 | 2020 |
| Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns A Mikheenko, AD Prjibelski, A Joglekar, HU Tilgner Genome Research 32 (4), 726-737, 2022 | 24 | 2022 |
| Sequence analysis AD Prjibelski, AI Korobeynikov, AL Lapidus Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2018 | 18 | 2018 |
Alexey GurevichJun. Prof. of Bioinformatics, HIPS & Saarland UniversityVerified email at helmholtz-hips.de
