Comprehensive integration of single-cell data T Stuart, A Butler, P Hoffman, C Hafemeister, E Papalexi, WM Mauck, ... cell 177 (7), 1888-1902. e21, 2019 | 12611 | 2019 |
Integrated analysis of multimodal single-cell data Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ... Cell 184 (13), 3573-3587. e29, 2021 | 9970 | 2021 |
Simultaneous epitope and transcriptome measurement in single cells M Stoeckius, C Hafemeister, W Stephenson, B Houck-Loomis, ... Nature methods 14 (9), 865-868, 2017 | 2869 | 2017 |
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics M Stoeckius, S Zheng, B Houck-Loomis, S Hao, BZ Yeung, WM Mauck, ... Genome biology 19, 1-12, 2018 | 970 | 2018 |
Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells EP Mimitou, A Cheng, A Montalbano, S Hao, M Stoeckius, M Legut, ... Nature methods 16 (5), 409, 2019 | 474 | 2019 |
Paternal diet defines offspring chromatin state and intergenerational obesity A Öst, A Lempradl, E Casas, M Weigert, T Tiko, M Deniz, L Pantano, ... Cell 159 (6), 1352-1364, 2014 | 438 | 2014 |
In vivo and transcriptome-wide identification of RNA binding protein target sites AC Jungkamp, M Stoeckius, D Mecenas, D Grün, G Mastrobuoni, ... Molecular cell 44 (5), 828-840, 2011 | 178 | 2011 |
A RORγt+ cell instructs gut microbiota-specific Treg cell differentiation R Kedmi, TA Najar, KR Mesa, A Grayson, L Kroehling, Y Hao, S Hao, ... Nature 610 (7933), 737-743, 2022 | 154 | 2022 |
Conservation of mRNA and protein expression during development of C. elegans D Grün, M Kirchner, N Thierfelder, M Stoeckius, M Selbach, N Rajewsky Cell reports 6 (3), 565-577, 2014 | 124 | 2014 |
Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression M Stoeckius, J Maaskola, T Colombo, HP Rahn, MR Friedländer, N Li, ... Nature methods 6 (10), 745-751, 2009 | 124 | 2009 |
Integration of whole transcriptome spatial profiling with protein markers N Ben-Chetrit, X Niu, AD Swett, J Sotelo, MS Jiao, CM Stewart, C Potenski, ... Nature biotechnology 41 (6), 788-793, 2023 | 102 | 2023 |
Global characterization of the oocyte‐to‐embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism M Stoeckius, D Grün, M Kirchner, S Ayoub, F Torti, F Piano, M Herzog, ... The EMBO journal 33 (16), 1751-1766, 2014 | 98 | 2014 |
Paternal RNA contributions in the Caenorhabditis elegans zygote M Stoeckius, D Grün, N Rajewsky The EMBO Journal 33 (16), 1740-1750, 2014 | 81 | 2014 |
Genome wide analysis of 3′ UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish CE Vejnar, MA Messih, CM Takacs, V Yartseva, P Oikonomou, ... Genome research 29 (7), 1100-1114, 2019 | 70 | 2019 |
Select microRNAs are essential for early development in the sea urchin JL Song, M Stoeckius, J Maaskola, M Friedländer, N Stepicheva, ... Developmental biology 362 (1), 104-113, 2012 | 70 | 2012 |
Clonal lineage tracing reveals shared origin of conventional and plasmacytoid dendritic cells J Feng, JN Pucella, G Jang, M Alcántara-Hernández, S Upadhaya, ... Immunity 55 (3), 405-422. e11, 2022 | 68 | 2022 |
Single cell analysis of blood mononuclear cells stimulated through either LPS or anti-CD3 and anti-CD28 N Lawlor, D Nehar-Belaid, JDS Grassmann, M Stoeckius, P Smibert, ... Frontiers in immunology 12, 636720, 2021 | 55 | 2021 |
Tracing tumorigenesis in a solid tumor model at single-cell resolution SD Praktiknjo, B Obermayer, Q Zhu, L Fang, H Liu, H Quinn, M Stoeckius, ... Nature communications 11 (1), 991, 2020 | 55 | 2020 |
Multiplexed single-cell analysis reveals prognostic and nonprognostic T cell types in human colorectal cancer K Masuda, A Kornberg, J Miller, S Lin, N Suek, T Botella, KA Secener, ... JCI insight 7 (7), 2022 | 47 | 2022 |
Essential roles of Raf/extracellular signal-regulated kinase/mitogen-activated protein kinase pathway, YY1, and Ca2+ influx in growth arrest of human vascular smooth muscle … M Stoeckius, A Erat, T Fujikawa, M Hiromura, A Koulova, L Otterbein, ... Journal of Biological Chemistry 287 (19), 15418-15426, 2012 | 32 | 2012 |