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Nima Aghaeepour
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Guidelines for the use of flow cytometry and cell sorting in immunological studies
A Cossarizza, HD Chang, A Radbruch, A Acs, D Adam, S Adam‐Klages, ...
European journal of immunology 49 (10), 1457-1973, 2019
17532019
Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, FlowCAP Consortium, Dream Consortium, ...
Nature methods 10 (3), 228-238, 2013
6552013
An immune clock of human pregnancy
N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai, M Tingle, S Van Gassen, ...
Science immunology 2 (15), eaan2946, 2017
4472017
Hematopoietic stem cell subtypes expand differentially during development and display distinct lymphopoietic programs
C Benz, MR Copley, DG Kent, S Wohrer, A Cortes, N Aghaeepour, E Ma, ...
Cell stem cell 10 (3), 273-283, 2012
3712012
Discovery and validation of biomarkers to aid the development of safe and effective pain therapeutics: challenges and opportunities
KD Davis, N Aghaeepour, AH Ahn, MS Angst, D Borsook, A Brenton, ...
Nature Reviews Neurology 16 (7), 381-400, 2020
2982020
Standardizing flow cytometry immunophenotyping analysis from the human immunophenotyping consortium
G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ...
Scientific reports 6 (1), 1-11, 2016
2982016
Rapid cell population identification in flow cytometry data
N Aghaeepour, R Nikolic, HH Hoos, RR Brinkman
Cytometry Part A 79 (1), 6-13, 2011
2452011
Multiomics Modeling of the Immunome, Transcriptome, Microbiome, Proteome, and Metabolome Adaptations During Human Pregnancy
MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ...
Bioinformatics, 2018
1532018
Flow cytometry bioinformatics
K O'Neill, N Aghaeepour, J Špidlen, R Brinkman
PLoS computational biology 9 (12), e1003365, 2013
1342013
CytoNorm: a normalization algorithm for cytometry data
S Van Gassen, B Gaudilliere, MS Angst, Y Saeys, N Aghaeepour
Cytometry Part A 97 (3), 268-278, 2020
1302020
Mortality risk among patients with COVID-19 prescribed selective serotonin reuptake inhibitor antidepressants
T Oskotsky, I Marić, A Tang, B Oskotsky, RJ Wong, N Aghaeepour, ...
JAMA network open 4 (11), e2133090-e2133090, 2021
1282021
Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse
Z Good, J Sarno, A Jager, N Samusik, N Aghaeepour, EF Simonds, ...
Nature medicine 24 (4), 474-483, 2018
1152018
A proteomic clock of human pregnancy
N Aghaeepour, B Lehallier, Q Baca, EA Ganio, RJ Wong, MS Ghaemi, ...
American journal of obstetrics and gynecology 218 (3), 347. e1-347. e14, 2018
1012018
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays
N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'neill, H Zare, A Jalali, ...
Bioinformatics 28 (7), 1009-1016, 2012
972012
Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset
IA Stelzer, MS Ghaemi, X Han, K Ando, JJ Hédou, D Feyaerts, ...
Science translational medicine 13 (592), eabd9898, 2021
952021
Patient-specific immune states before surgery are strong correlates of surgical recovery
GK Fragiadakis, B Gaudillière, EA Ganio, N Aghaeepour, M Tingle, ...
Anesthesiology 123 (6), 1241-1255, 2015
922015
Commonly occurring cell subsets in high-grade serous ovarian tumors identified by single-cell mass cytometry
VD Gonzalez, N Samusik, TJ Chen, ES Savig, N Aghaeepour, DA Quigley, ...
Cell reports 22 (7), 1875-1888, 2018
902018
Multicenter systems analysis of human blood reveals immature neutrophils in males and during pregnancy
J Blazkova, S Gupta, Y Liu, B Gaudilliere, EA Ganio, CR Bolen, ...
The Journal of Immunology 198 (6), 2479-2488, 2017
862017
Differential dynamics of the maternal immune system in healthy pregnancy and preeclampsia
X Han, MS Ghaemi, K Ando, LS Peterson, EA Ganio, AS Tsai, ...
Frontiers in immunology 10, 450842, 2019
812019
Early prediction of preeclampsia via machine learning
I Marić, A Tsur, N Aghaeepour, A Montanari, DK Stevenson, GM Shaw, ...
American Journal of Obstetrics & Gynecology MFM 2 (2), 100100, 2020
792020
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Articles 1–20