| RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ... Scientific reports 5 (1), 1-6, 2015 | 2583 | 2015 |
| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1609 | 2017 |
| Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) D Martinez, RM Berka, B Henrissat, M Saloheimo, M Arvas, SE Baker, ... Nature biotechnology 26 (5), 553-560, 2008 | 1389 | 2008 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1239 | 2018 |
| Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils NL Ward, JF Challacombe, PH Janssen, B Henrissat, PM Coutinho, M Wu, ... Applied and environmental microbiology 75 (7), 2046-2056, 2009 | 1069 | 2009 |
| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 928 | 2020 |
| Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion D Martinez, J Challacombe, I Morgenstern, D Hibbett, M Schmoll, ... Proceedings of the National Academy of Sciences 106 (6), 1954-1959, 2009 | 690 | 2009 |
| Genomewide search in Canadian families with inflammatory bowel disease reveals two novel susceptibility loci JD Rioux, MS Silverberg, MJ Daly, AH Steinhart, RS McLeod, AM Griffiths, ... The American Journal of Human Genetics 66 (6), 1863-1870, 2000 | 629 | 2000 |
| Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization B Robertson, G Myers, C Howard, T Brettin, J Bukh, B Gaschen, ... Archives of virology 143, 2493-2503, 1998 | 626 | 1998 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 531 | 2023 |
| Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens MW Silby, AM Cerdeño-Tárraga, GS Vernikos, SR Giddens, RW Jackson, ... Genome biology 10, 1-16, 2009 | 490 | 2009 |
| Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae J Chun, CJ Grim, NA Hasan, JH Lee, SY Choi, BJ Haley, E Taviani, ... Proceedings of the National Academy of Sciences 106 (36), 15442-15447, 2009 | 432 | 2009 |
| Mapping of a gene for type 2 diabetes associated with an insulin secretion defect by a genome scan in Finnish families MM Mahtani, E Widén, M Lehto, J Thomas, M McCarthy, J Brayer, ... Nature genetics 14 (1), 90-94, 1996 | 420 | 1996 |
| The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum) E Pierce, G Xie, RD Barabote, E Saunders, CS Han, JC Detter, ... Environmental microbiology 10 (10), 2550-2573, 2008 | 327 | 2008 |
| Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus NE Kimes, CJ Grim, WR Johnson, NA Hasan, BD Tall, MH Kothary, H Kiss, ... The ISME journal 6 (4), 835-846, 2012 | 298 | 2012 |
| Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks KS Makarova, MV Omelchenko, EK Gaidamakova, VY Matrosova, ... PLoS One 2 (9), e955, 2007 | 298 | 2007 |
| Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis CS Han, G Xie, JF Challacombe, MR Altherr, SS Bhotika, D Bruce, ... Journal of bacteriology 188 (9), 3382-3390, 2006 | 298 | 2006 |
| Characterization of the MODY3 phenotype. Early-onset diabetes caused by an insulin secretion defect. M Lehto, T Tuomi, MM Mahtani, E Widén, C Forsblom, L Sarelin, ... The Journal of clinical investigation 99 (4), 582-591, 1997 | 294 | 1997 |
| Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii G Xie, DC Bruce, JF Challacombe, O Chertkov, JC Detter, P Gilna, ... Applied and environmental microbiology 73 (11), 3536-3546, 2007 | 276 | 2007 |
| Antimicrobial resistance prediction in PATRIC and RAST JJ Davis, S Boisvert, T Brettin, RW Kenyon, C Mao, R Olson, R Overbeek, ... Scientific reports 6 (1), 27930, 2016 | 239 | 2016 |
