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S. Cenk Sahinalp
S. Cenk Sahinalp
Senior Investigator, Cancer Data Science Lab, National Cancer Institute, NIH
Bestätigte E-Mail-Adresse bei nih.gov - Startseite
Titel
Zitiert von
Zitiert von
Jahr
A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
85262010
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ...
Bioinformatics 26 (13), 1608-1615, 2010
23512010
Personalized copy number and segmental duplication maps using next-generation sequencing
C Alkan, JM Kidd, T Marques-Bonet, G Aksay, F Antonacci, F Hormozdiari, ...
Nature genetics 41 (10), 1061-1067, 2009
9672009
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
7742020
Demographic history and rare allele sharing among human populations
S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ...
Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011
6642011
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data
A McPherson, F Hormozdiari, A Zayed, R Giuliany, G Ha, MGF Sun, ...
PLoS computational biology 7 (5), e1001138, 2011
6052011
Genomic hallmarks of localized, non-indolent prostate cancer
M Fraser, VY Sabelnykova, TN Yamaguchi, LE Heisler, J Livingstone, ...
Nature 541 (7637), 359-364, 2017
5542017
Spatial genomic heterogeneity within localized, multifocal prostate cancer
PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ...
Nature genetics 47 (7), 736-745, 2015
5002015
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp
Genome research 19 (7), 1270-1278, 2009
3832009
mrsFAST: a cache-oblivious algorithm for short-read mapping
F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ...
Nature methods 7 (8), 576-577, 2010
3462010
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
RD Morin, G Aksay, E Dolgosheina, HA Ebhardt, V Magrini, ER Mardis, ...
Genome research 18 (4), 571-584, 2008
3392008
Widespread and functional RNA circularization in localized prostate cancer
S Chen, V Huang, X Xu, J Livingstone, F Soares, J Jeon, Y Zeng, JT Hua, ...
Cell 176 (4), 831-843. e22, 2019
3322019
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ...
Bioinformatics 26 (12), i350-i357, 2010
2682010
Biomolecular network motif counting and discovery by color coding
N Alon, P Dao, I Hajirasouliha, F Hormozdiari, SC Sahinalp
Bioinformatics 24 (13), i241-i249, 2008
2442008
Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set
I Sushko, S Novotarskyi, R Körner, AK Pandey, A Cherkasov, J Li, ...
Journal of chemical information and modeling 50 (12), 2094-2111, 2010
2422010
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
2352021
The structure and evolution of centromeric transition regions within the human genome
X She, JE Horvath, Z Jiang, G Liu, TS Furey, L Christ, R Clark, T Graves, ...
Nature 430 (7002), 857-864, 2004
2152004
The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression
YS Niknafs, S Han, T Ma, C Speers, C Zhang, K Wilder-Romans, MK Iyer, ...
Nature communications 7 (1), 12791, 2016
2032016
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer
AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ...
The Journal of pathology 227 (3), 286-297, 2012
2012012
Clonality inference in multiple tumor samples using phylogeny
S Malikic, AW McPherson, N Donmez, CS Sahinalp
Bioinformatics 31 (9), 1349-1356, 2015
1992015
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