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Aliza B. Rubenstein
Aliza B. Rubenstein
Postdoctoral Fellow, Icahn School of Medicine at Mount Sinai
Bestätigte E-Mail-Adresse bei rutgers.edu
Titel
Zitiert von
Zitiert von
Jahr
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5782020
Single-cell transcriptional profiles in human skeletal muscle
AB Rubenstein, GR Smith, U Raue, G Begue, K Minchev, F Ruf-Zamojski, ...
Scientific reports 10 (1), 229, 2020
2142020
Molecular transducers of physical activity consortium (MoTrPAC): Mapping the dynamic responses to exercise
JA Sanford, CD Nogiec, ME Lindholm, JN Adkins, D Amar, S Dasari, ...
Cell 181 (7), 1464-1474, 2020
1772020
Data-driven supervised learning of a viral protease specificity landscape from deep sequencing and molecular simulations
MA Pethe, AB Rubenstein, SD Khare
Proceedings of the National Academy of Sciences 116 (1), 168-176, 2019
292019
Systematic Comparison of Amber and Rosetta Energy Functions for Protein Structure Evaluation
AB Rubenstein, K Blacklock, H Nguyen, DA Case, SD Khare
Journal of chemical theory and computation 14 (11), 6015-6025, 2018
242018
Large-scale structure-based prediction and identification of novel protease substrates using computational protein design
MA Pethe, AB Rubenstein, SD Khare
Journal of molecular biology 429 (2), 220-236, 2017
222017
Large-scale Structure-based Prediction and Identification of Novel Protease Substrates using Computational Protein Design
MA Pethe, AB Rubenstein, SD Khare
Journal of Molecular Biology 429 (2), 220-236, 2017
222017
Attenuated activation of pulmonary immune cells in mRNA-1273–vaccinated hamsters after SARS-CoV-2 infection
M Meyer, Y Wang, D Edwards, GR Smith, AB Rubenstein, P Ramanathan, ...
The Journal of Clinical Investigation 131 (20), 2021
192021
Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults
AB Rubenstein, JM Hinkley, VD Nair, G Nudelman, RA Standley, F Yi, ...
American Journal of Physiology-Endocrinology and Metabolism 322 (3), E260-E277, 2022
162022
MFPred: Rapid and accurate prediction of protein-peptide recognition multispecificity using self-consistent mean field theory.
AB Rubenstein, MA Pethe, SD Khare
PLoS computational biology 13 (6), e1005614, 2017
152017
Temporal dynamics of the multi-omic response to endurance exercise training across tissues
MoTrPAC Study Group, D Amar, NR Gay, PM Jean Beltran, JN Adkins, ...
bioRxiv, 2022.09. 21.508770, 2022
122022
mRNA-1273 efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after challenge
M Meyer, Y Wang, D Edwards, GR Smith, AB Rubenstein, P Ramanathan, ...
bioRxiv, 2021.01. 25.428136, 2021
122021
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data
X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ...
Nature computational science 3 (7), 644-657, 2023
62023
Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature
A Cappuccio, DG Chawla, X Chen, AB Rubenstein, WS Cheng, W Mao, ...
Cell Systems 13 (12), 989-1001. e8, 2022
32022
Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise
AB Rubenstein, GR Smith, Z Zhang, X Chen, TL Chambers, ...
bioRxiv, 2023
12023
Fast and slow muscle fiber transcriptome dynamics with lifelong endurance exercise
U Raue, G Begue, K Minchev, B Jemiolo, KJ Gries, T Chambers, ...
Journal of Applied Physiology 136 (2), 244-261, 2024
2024
THU082 Longitudinal Multiomics Characterization Of Paired Primary And Recurrent Aggressive Pituitary Tumors From The Same Patient Reveals Genomic Stability And Transcriptomic …
K Taniguchi-Ponciano, A Chavez-Santoscoy, S Hinojosa-Alvarez, ...
Journal of the Endocrine Society 7 (Supplement_1), bvad114. 1162, 2023
2023
Longitudinal multiomics characterization of paired primary and recurrent aggressive pituitary tumors from the same patient reveals genomic stability and transcriptomic and …
K Taniguchi, A Chavez-Santoscoy, S Hinojosa-Alvarez, ...
Endocrine Abstracts 90, 2023
2023
Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data
X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ...
Nature Computational Science 3 (9), 805, 2023
2023
Corrections & amendments
X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ...
2023
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