The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005 | 2353 | 2005 |
The use of gene clusters to infer functional coupling R Overbeek, M Fonstein, M D’souza, GD Pusch, N Maltsev Proceedings of the National Academy of Sciences 96 (6), 2896-2901, 1999 | 1634 | 1999 |
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ... Nature 423 (6935), 87-91, 2003 | 997 | 2003 |
Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 SY Gerdes, MD Scholle, JW Campbell, G Balazsi, E Ravasz, ... Journal of bacteriology 185 (19), 5673-5684, 2003 | 956 | 2003 |
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus A Bolotin, B Quinquis, P Renault, A Sorokin, SD Ehrlich, S Kulakauskas, ... Nature biotechnology 22 (12), 1554-1558, 2004 | 661 | 2004 |
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction R Overbeek, N Larsen, GD Pusch, M D’Souza, ES Jr, N Kyrpides, ... Nucleic acids research 28 (1), 123-125, 2000 | 482 | 2000 |
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586 V Kapatral, I Anderson, N Ivanova, G Reznik, T Los, A Lykidis, ... Journal of bacteriology 184 (7), 2005-2018, 2002 | 462 | 2002 |
From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways SY Gerdes, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, ... Journal of bacteriology 184 (16), 4555-4572, 2002 | 345 | 2002 |
The ERGO TM genome analysis and discovery system R Overbeek, N Larsen, T Walunas, M D'Souza, G Pusch, E Selkov Jr, ... Nucleic acids research 31 (1), 164-171, 2003 | 290 | 2003 |
Use of contiguity on the chromosome to predict functional coupling R Overbeek, M Fonstein, M D'Souza, GD Pusch, N Maltsev In Silico Biology 1 (2), 93-108, 1999 | 211 | 1999 |
Essential genes on metabolic maps S Gerdes, R Edwards, M Kubal, M Fonstein, R Stevens, A Osterman Current opinion in biotechnology 17 (5), 448-456, 2006 | 137 | 2006 |
Physical mapping of bacterial genomes M Fonstein, R Haselkorn Journal of Bacteriology 177 (12), 3361-3369, 1995 | 116 | 1995 |
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis I Anderson, A Sorokin, V Kapatral, G Reznik, A Bhattacharya, ... FEMS Microbiology Letters 250 (2), 175-184, 2005 | 103 | 2005 |
Functional analysis of gapped microbial genomes: Amino acid metabolism of Thiobacillus ferrooxidans E Selkov, R Overbeek, Y Kogan, L Chu, V Vonstein, D Holmes, S Silver, ... Proceedings of the National Academy of Sciences 97 (7), 3509-3514, 2000 | 86 | 2000 |
Chromosomal structure of Rhodobacter capsulatus strain SB1003: cosmid encyclopedia and high-resolution physical and genetic map. M Fonstein, R Haselkorn Proceedings of the National Academy of Sciences 90 (6), 2522-2526, 1993 | 60 | 1993 |
The Rhodobacter capsulatus genome R Haselkorn, A Lapidus, Y Kogan, C Vlcek, J Paces, V Paces, P Ulbrich, ... Photosynthesis Research 70, 43-52, 2001 | 50 | 2001 |
Sequence of a 189-kb segment of the chromosome of Rhodobacter capsulatus SB1003 Č Vlček, V Paces, N Maltsev, J Pačes, R Haselkorn, M Fonstein Proceedings of the National Academy of Sciences 94 (17), 9384-9388, 1997 | 48 | 1997 |
Refinement of the high‐resolution physical and genetic map of Rhodobacter capsulatus and genome surveys using blots of the cosmid encyclopedia. M Fonstein, EG Koshy, T Nikolskaya, P Mourachov, R Haselkorn The EMBO Journal 14 (8), 1827-1841, 1995 | 33 | 1995 |
Learning curves for drug response prediction in cancer cell lines A Partin, T Brettin, YA Evrard, Y Zhu, H Yoo, F Xia, S Jiang, A Clyde, ... BMC bioinformatics 22, 1-18, 2021 | 26 | 2021 |
Alignment of a 1.2-Mb chromosomal region from three strains of Rhodobacter capsulatus reveals a significantly mosaic structure. T Nikolskaya, M Fonstein, R Haselkorn Proceedings of the National Academy of Sciences 92 (23), 10609-10613, 1995 | 19 | 1995 |