Michael Fonstein
Michael Fonstein
Argonne National Lab
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Cited by
Cited by
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
The use of gene clusters to infer functional coupling
R Overbeek, M Fonstein, M D’souza, GD Pusch, N Maltsev
Proceedings of the National Academy of Sciences 96 (6), 2896-2901, 1999
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ...
Nature 423 (6935), 87-91, 2003
Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655
SY Gerdes, MD Scholle, JW Campbell, G Balazsi, E Ravasz, ...
Journal of bacteriology 185 (19), 5673-5684, 2003
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
A Bolotin, B Quinquis, P Renault, A Sorokin, SD Ehrlich, S Kulakauskas, ...
Nature biotechnology 22 (12), 1554-1558, 2004
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
R Overbeek, N Larsen, GD Pusch, M D’Souza, ES Jr, N Kyrpides, ...
Nucleic acids research 28 (1), 123-125, 2000
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586
V Kapatral, I Anderson, N Ivanova, G Reznik, T Los, A Lykidis, ...
Journal of bacteriology 184 (7), 2005-2018, 2002
From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways
SY Gerdes, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, ...
Journal of Bacteriology 184 (16), 4555-4572, 2002
The ERGO TM genome analysis and discovery system
R Overbeek, N Larsen, T Walunas, M D'Souza, G Pusch, E Selkov Jr, ...
Nucleic acids research 31 (1), 164-171, 2003
Use of contiguity on the chromosome to predict functional coupling
R Overbeek, M Fonstein, M D'Souza, GD Pusch, N Maltsev
In Silico Biology 1 (2), 93-108, 1999
Essential genes on metabolic maps
S Gerdes, R Edwards, M Kubal, M Fonstein, R Stevens, A Osterman
Current opinion in biotechnology 17 (5), 448-456, 2006
Physical mapping of bacterial genomes
M Fonstein, R Haselkorn
Journal of Bacteriology 177 (12), 3361-3369, 1995
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis
I Anderson, A Sorokin, V Kapatral, G Reznik, A Bhattacharya, ...
FEMS Microbiology Letters 250 (2), 175-184, 2005
Functional analysis of gapped microbial genomes: Amino acid metabolism of Thiobacillus ferrooxidans
E Selkov, R Overbeek, Y Kogan, L Chu, V Vonstein, D Holmes, S Silver, ...
Proceedings of the National Academy of Sciences 97 (7), 3509-3514, 2000
Chromosomal structure of Rhodobacter capsulatus strain SB1003: cosmid encyclopedia and high-resolution physical and genetic map.
M Fonstein, R Haselkorn
Proceedings of the National Academy of Sciences 90 (6), 2522-2526, 1993
The Rhodobacter capsulatus genome
R Haselkorn, A Lapidus, Y Kogan, C Vlcek, J Paces, V Paces, P Ulbrich, ...
Photosynthesis Research 70, 43-52, 2001
Sequence of a 189-kb segment of the chromosome of Rhodobacter capsulatus SB1003
Č Vlček, V Paces, N Maltsev, J Pačes, R Haselkorn, M Fonstein
Proceedings of the National Academy of Sciences 94 (17), 9384-9388, 1997
Refinement of the high‐resolution physical and genetic map of Rhodobacter capsulatus and genome surveys using blots of the cosmid encyclopedia.
M Fonstein, EG Koshy, T Nikolskaya, P Mourachov, R Haselkorn
The EMBO Journal 14 (8), 1827-1841, 1995
Alignment of a 1.2-Mb chromosomal region from three strains of Rhodobacter capsulatus reveals a significantly mosaic structure.
T Nikolskaya, M Fonstein, R Haselkorn
Proceedings of the National Academy of Sciences 92 (23), 10609-10613, 1995
Learning curves for drug response prediction in cancer cell lines
A Partin, T Brettin, YA Evrard, Y Zhu, H Yoo, F Xia, S Jiang, A Clyde, ...
BMC bioinformatics 22, 1-18, 2021
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