| Single-cell transcriptomic analysis of Alzheimer’s disease H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ... Nature 570 (7761), 332-337, 2019 | 1454 | 2019 |
| Kavosh: a new algorithm for finding network motifs ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ... BMC bioinformatics 10 (1), 1-12, 2009 | 271 | 2009 |
| Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration M Menon, S Mohammadi, J Davila-Velderrain, BA Goods, TD Cadwell, ... Nature communications 10 (1), 4902, 2019 | 183 | 2019 |
| Cell type-specific transcriptomics reveals that mutant huntingtin leads to mitochondrial RNA release and neuronal innate immune activation H Lee, RJ Fenster, SS Pineda, WS Gibbs, S Mohammadi, ... Neuron 107 (5), 891-908. e8, 2020 | 112 | 2020 |
| Network similarity decomposition (nsd): A fast and scalable approach to network alignment G Kollias, S Mohammadi, A Grama IEEE Transactions on Knowledge and Data Engineering 24 (12), 2232-2243, 2011 | 101 | 2011 |
| Scope and limitations of yeast as a model organism for studying human tissue-specific pathways S Mohammadi, B Saberidokht, S Subramaniam, A Grama BMC systems biology 9, 1-22, 2015 | 76 | 2015 |
| A Critical Survey of Deconvolution Methods for Separating Cell-Types in Complex Tissues S Mohammadi, N Zuckerman, A Goldsmith, A Grama Proceedings of IEEE, Special Issue on Principles and Applications of Science …, 2016 | 73 | 2016 |
| Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic link and transcriptional resilience associated cellular state B Ruzicka, S Mohammadi, J Davila-Velderrain, S Subburaju, R Tso, ... Biological psychiatry 89 (9), S106, 2021 | 52 | 2021 |
| Reconstruction of cell-type-specific interactomes at single-cell resolution S Mohammadi, J Davila-Velderrain, M Kellis Cell systems 9 (6), 559-568. e4, 2019 | 52 | 2019 |
| Low rank spectral network alignment H Nassar, N Veldt, S Mohammadi, A Grama, DF Gleich Proceedings of the 2018 World Wide Web Conference, 619-628, 2018 | 49 | 2018 |
| A geometric approach to characterize the functional identity of single cells S Mohammadi, V Ravindra, DF Gleich, A Grama Nature communications 9 (1), 1516, 2018 | 47 | 2018 |
| Triangular Alignment (TAME): A Tensor-based Approach for Higher-order Network Alignment S Mohammadi, DF Gleich, TG Kolda, A Grama IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1, 2016 | 47 | 2016 |
| A multiresolution framework to characterize single-cell state landscapes S Mohammadi, J Davila-Velderrain, M Kellis Nature communications 11 (1), 5399, 2020 | 33 | 2020 |
| Author Correction: Single-cell transcriptomic analysis of Alzheimer’s disease H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ... Nature 571 (7763), E1-E1, 2019 | 29 | 2019 |
| Spatial estimation of soil erosion in Iran using RUSLE model S Mohammadi, H Karimzadeh, M Alizadeh Iranian journal of Ecohydrology 5 (2), 551-569, 2018 | 29 | 2018 |
| A fast approach to global alignment of protein-protein interaction networks G Kollias, M Sathe, S Mohammadi, A Grama BMC research notes 6 (1), 1-11, 2013 | 27 | 2013 |
| Single-cell profiling of the human primary motor cortex in ALS and FTLD SS Pineda, H Lee, BE Fitzwalter, S Mohammadi, LJ Pregent, ... bioRxiv, 2021.07. 07.451374, 2021 | 21 | 2021 |
| Context-specific recommendation system for predicting similar pubmed articles S Mohammadi, S Kylasa, G Kollias, A Grama 2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW …, 2016 | 15 | 2016 |
| A convex optimization approach for identification of human tissue-specific interactomes S Mohammadi, A Grama Bioinformatics 32 (12), 2016 | 13 | 2016 |
| Biological network alignment S Mohammadi, A Grama Functional Coherence of Molecular Networks in Bioinformatics, 97-136, 2011 | 13 | 2011 |
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu
