| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1568 | 2017 |
| PATRIC, the bacterial bioinformatics database and analysis resource AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ... Nucleic acids research 42 (D1), D581-D591, 2014 | 1374 | 2014 |
| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 905 | 2020 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 444 | 2023 |
| PATRIC as a unique resource for studying antimicrobial resistance DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ... Briefings in bioinformatics 20 (4), 1094-1102, 2019 | 112 | 2019 |
| Assembly, annotation, and comparative genomics in PATRIC, the all bacterial bioinformatics resource center AR Wattam, T Brettin, JJ Davis, S Gerdes, R Kenyon, D Machi, C Mao, ... Comparative genomics: Methods and protocols, 79-101, 2018 | 94 | 2018 |
| Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination S Truelove, CP Smith, M Qin, LC Mullany, RK Borchering, J Lessler, ... Elife 11, e73584, 2022 | 43 | 2022 |
| Evaluating the impact of international airline suspensions on the early global spread of COVID-19 A Adiga, S Venkatramanan, J Schlitt, A Peddireddy, A Dickerman, A Bura, ... Medrxiv, 2020 | 37 | 2020 |
| Impact of SARS-CoV-2 vaccination of children ages 5–11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021–March 2022: A multi … RK Borchering, LC Mullany, E Howerton, M Chinazzi, CP Smith, M Qin, ... The Lancet Regional Health–Americas 17, 2023 | 30 | 2023 |
| Generative modeling of human behavior and social interactions using abductive analysis Y Ren, V Cedeno-Mieles, Z Hu, X Deng, A Adiga, C Barrett, S Ekanayake, ... 2018 IEEE/ACM International Conference on Advances in Social Networks …, 2018 | 30 | 2018 |
| Scalable epidemiological workflows to support covid-19 planning and response D Machi, P Bhattacharya, S Hoops, J Chen, H Mortveit, S Venkatramanan, ... 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2021 | 24 | 2021 |
| A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes M VanOeffelen, M Nguyen, D Aytan-Aktug, T Brettin, EM Dietrich, ... Briefings in Bioinformatics 22 (6), bbab313, 2021 | 22 | 2021 |
| Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty E Howerton, L Contamin, LC Mullany, M Qin, NG Reich, S Bents, ... Nature communications 14 (1), 7260, 2023 | 21 | 2023 |
| From 5vs to 6cs: Operationalizing epidemic data management with covid-19 surveillance AS Peddireddy, D Xie, P Patil, ML Wilson, D Machi, S Venkatramanan, ... 2020 IEEE International Conference on Big Data (Big Data), 1380-1387, 2020 | 21 | 2020 |
| Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework V Cedeno-Mieles, Z Hu, Y Ren, X Deng, A Adiga, C Barrett, N Contractor, ... Social Network Analysis and Mining 10, 1-43, 2020 | 21 | 2020 |
| Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support P Bhattacharya, J Chen, S Hoops, D Machi, B Lewis, S Venkatramanan, ... The International Journal of High Performance Computing Applications 37 (1 …, 2023 | 17 | 2023 |
| Evaluating the impact of international airline suspensions on COVID-19 direct importation risk A Adiga, S Venkatramanan, A Peddireddy, A Telionis, A Dickerman, ... medRxiv, 2020.02. 20.20025882, 2020 | 16 | 2020 |
| COVID’s collateral damage: likelihood of measles resurgence in the United States M Thakur, R Zhou, M Mohan, A Marathe, J Chen, S Hoops, D Machi, ... BMC Infectious Diseases 22 (1), 743, 2022 | 15 | 2022 |
| net. science: A cyberinfrastructure for sustained innovation in network science and engineering N Ahmed, R Alo, C Amelink, YY Baek, A Chudhary, K Collins, A Esterline, ... Gateways Conference 2020, 2020 | 14 | 2020 |
| Csonnet: An agent-based modeling software system for discrete time simulation JD Priest, A Kishore, L Machi, CJ Kuhlman, D Machi, SS Ravi 2021 Winter Simulation Conference (WSC), 1-12, 2021 | 13 | 2021 |
Madhav MaratheDistinguished Professor, Biocomplexity-Institute, Dept. Computer Science, University of VirginiaVerified email at virginia.edu
