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Aaron Sim
Aaron Sim
Synteny
Verified email at synteny.ai
Title
Cited by
Cited by
Year
E7 (7) formulation of N= 2 backgrounds
M Grana, J Louis, A Sim, D Waldram
Journal of High Energy Physics 2009 (07), 104, 2009
912009
Quantification of HTLV-1 clonality and TCR diversity
DJ Laydon, A Melamed, A Sim, NA Gillet, K Sim, S Darko, JS Kroll, ...
PLoS computational biology 10 (6), e1003646, 2014
862014
Big data in drug discovery
N Brown, J Cambruzzi, PJ Cox, M Davies, J Dunbar, D Plumbley, ...
Progress in medicinal chemistry 57, 277-356, 2018
602018
Systems analysis of the dynamic inflammatory response to tissue damage reveals spatiotemporal properties of the wound attractant gradient
H Weavers, J Liepe, A Sim, W Wood, P Martin, MPH Stumpf
Current Biology 26 (15), 1975-1989, 2016
602016
Information theory and signal transduction systems: from molecular information processing to network inference
SS Mc Mahon, A Sim, S Filippi, R Johnson, J Liepe, D Smith, MPH Stumpf
Seminars in cell & developmental biology 35, 98-108, 2014
602014
Interpretable graph convolutional neural networks for inference on noisy knowledge graphs
D Neil, J Briody, A Lacoste, A Sim, P Creed, A Saffari
arXiv preprint arXiv:1812.00279, 2018
342018
Inference of random walk models to describe leukocyte migration
PJM Jones, A Sim, HB Taylor, L Bugeon, MJ Dallman, B Pereira, ...
Physical biology 12 (6), 066001, 2015
332015
Great cities look small
A Sim, SN Yaliraki, M Barahona, MPH Stumpf
Journal of The Royal Society Interface 12 (109), 20150315, 2015
262015
Nanog fluctuations in embryonic stem cells highlight the problem of measurement in cell biology
RCG Smith, PS Stumpf, SJ Ridden, A Sim, S Filippi, HA Harrington, ...
Biophysical journal 112 (12), 2641-2652, 2017
192017
Single cell phenotyping reveals heterogeneity among hematopoietic stem cells following infection
AL MacLean, MA Smith, J Liepe, A Sim, R Khorshed, NM Rashidi, ...
Stem Cells 35 (11), 2292-2304, 2017
182017
Random forests on distance matrices for imaging genetics studies
A Sim, D Tsagkrasoulis, G Montana
Statistical applications in genetics and molecular biology 12 (6), 757-786, 2013
132013
Graph neutral networks with attention
P Creed, SIM Aaron, A Alamdari, J Briody, D Neil, A Lacoste
US Patent App. 17/041,625, 2021
102021
Accurate reconstruction of cell and particle tracks from 3D live imaging data
J Liepe, A Sim, H Weavers, L Ward, P Martin, MPH Stumpf
Cell systems 3 (1), 102-107, 2016
102016
Directed graph embeddings in pseudo-riemannian manifolds
A Sim, ML Wiatrak, A Brayne, P Creed, S Paliwal
International Conference on Machine Learning, 9681-9690, 2021
92021
Attention filtering for multiple instance learning
P Creed, AJKJ Sim, ST Spencer, MJ Vilenius
US Patent App. 17/041,533, 2021
92021
Goldstein-Kac telegraph processes with random speeds: Path probabilities, likelihoods, and reported LÚvy flights
A Sim, J Liepe, MPH Stumpf
Physical Review E 91 (4), 042115, 2015
62015
Information geometry and sequential Monte Carlo
A Sim, S Filippi, MPH Stumpf
arXiv preprint arXiv:1212.0764, 2012
62012
Information geometry and sequential Monte Carlo samplers
A Sim, S Filippi, MPH Stumpf
arXiv preprint ArXiv:1212.0764, 2012
52012
Hierarchical relationship extraction
P Creed, AJKJ Sim
US Patent App. 17/268,124, 2021
32021
Contrastive mixture of posteriors for counterfactual inference, data integration and fairness
A Foster, ┴ VezÚr, CA Glastonbury, P Creed, S Abujudeh, A Sim
International Conference on Machine Learning, 6578-6621, 2022
22022
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Articles 1–20