cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination A Punjani, JL Rubinstein, DJ Fleet, MA Brubaker Nature methods 14 (3), 290-296, 2017 | 6646 | 2017 |
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction A Punjani, H Zhang, DJ Fleet Nature methods 17 (12), 1214-1221, 2020 | 1041 | 2020 |
3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM A Punjani, DJ Fleet Journal of structural biology 213 (2), 107702, 2021 | 728 | 2021 |
Fast search in hamming space with multi-index hashing M Norouzi, A Punjani, DJ Fleet 2012 IEEE conference on computer vision and pattern recognition, 3108-3115, 2012 | 312 | 2012 |
Deep learning helicopter dynamics models A Punjani, P Abbeel 2015 IEEE International Conference on Robotics and Automation (ICRA), 3223-3230, 2015 | 246 | 2015 |
Fast exact search in hamming space with multi-index hashing M Norouzi, A Punjani, DJ Fleet IEEE transactions on pattern analysis and machine intelligence 36 (6), 1107-1119, 2013 | 206 | 2013 |
3DFlex: determining structure and motion of flexible proteins from cryo-EM A Punjani, DJ Fleet Nature Methods 20 (6), 860-870, 2023 | 125 | 2023 |
3D flexible refinement: structure and motion of flexible proteins from Cryo-EM A Punjani, DJ Fleet BioRxiv, 2021.04. 22.440893, 2021 | 73 | 2021 |
Building proteins in a day: efficient 3D molecular structure estimation with electron cryomicroscopy A Punjani, MA Brubaker, DJ Fleet IEEE Transactions on Pattern Analysis and Machine Intelligence 39 (4), 706-718, 2016 | 54 | 2016 |
Algorithmic advances in single particle cryo-EM data processing using CryoSPARC A Punjani Microscopy and Microanalysis 26 (S2), 2322-2323, 2020 | 22 | 2020 |
Building proteins in a day: Efficient 3D molecular reconstruction MA Brubaker, A Punjani, DJ Fleet Proceedings of the IEEE Conference on Computer Vision and Pattern …, 2015 | 22 | 2015 |
Fast search in hamming space with multi-index hashing DJ Fleet, A Punjani, M Norouzi 2012 IEEE Conference on Computer Vision and Pattern Recognition, 3108-3115, 2012 | 17 | 2012 |
Alpha-Beta Divergences Discover Micro and Macro Structures in Data. KS Narayan, A Punjani, P Abbeel ICML, 796-804, 2015 | 13 | 2015 |
Real-time cryo-EM structure determination A Punjani Microscopy and Microanalysis 27 (S1), 1156-1157, 2021 | 12 | 2021 |
Smart data collection for CryoEM T Bepler, AJ Borst, J Bouvette, G Cannone, S Chen, A Cheng, A Cheng, ... Journal of Structural Biology 214 (4), 107913, 2022 | 9 | 2022 |
3D flexible refinement: determining structure and motion of flexible proteins from cryo-EM A Punjani, D Fleet Microscopy and Microanalysis 29 (Supplement_1), 1024-1024, 2023 | 5 | 2023 |
Advances in modelling continuous heterogeneity from single particle cryo-EM data A Punjani, D Fleet Foundations of Crystallography 77, A235-A235, 2021 | 2 | 2021 |
Protocol for rapid unsupervised cryo-EM structure determination using cryoSPARC software A Punjani, M Brubaker, J Rubinstein, D Fleet | 2 | 2017 |
Microscopic advances with large-scale learning: Stochastic optimization for cryo-EM A Punjani, MA Brubaker arXiv preprint arXiv:1501.04656, 2015 | 2 | 2015 |
Mapping the motion and structure of flexible proteins from cryo-EM data A Punjani, DJ Fleet NATURE METHODS 20 (6), 797-798, 2023 | 1 | 2023 |