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Alicia Schep
Alicia Schep
Former Genetics PhD at Stanford University
Bestätigte E-Mail-Adresse bei outlier.ai - Startseite
Titel
Zitiert von
Zitiert von
Jahr
chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
AN Schep, B Wu, JD Buenrostro, WJ Greenleaf
Nature Methods 14, 975–978, 2017
10682017
Integrated single-cell analysis maps the continuous regulatory landscape of human hematopoietic differentiation
JD Buenrostro, MR Corces, CA Lareau, B Wu, AN Schep, MJ Aryee, ...
Cell 173 (6), 1535-1548. e16, 2018
6332018
Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
AN Schep, JD Buenrostro, SK Denny, K Schwartz, G Sherlock, ...
Genome research 25 (11), 1757-1770, 2015
3572015
Nfib promotes metastasis through a widespread increase in chromatin accessibility
SK Denny, D Yang, CH Chuang, JJ Brady, JS Lim, BM Grüner, SH Chiou, ...
Cell 166 (2), 328-342, 2016
3412016
Transcript-indexed ATAC-seq for precision immune profiling
AT Satpathy, N Saligrama, JD Buenrostro, Y Wei, B Wu, AJ Rubin, ...
Nature medicine 24 (5), 580-590, 2018
1242018
Unsupervised clustering and epigenetic classification of single cells
M Zamanighomi, Z Lin, T Daley, X Chen, Z Duren, A Schep, WJ Greenleaf, ...
Nature communications 9 (1), 2410, 2018
1062018
Genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12
GT Wong, RP Bonocora, AN Schep, SM Beeler, AJ Lee Fong, LM Shull, ...
Journal of bacteriology 199 (7), 10.1128/jb. 00755-16, 2017
882017
Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity
X Chen, UM Litzenburger, Y Wei, AN Schep, EL LaGory, H Choudhry, ...
Nature communications 9 (1), 4590, 2018
842018
A comparative analysis of transcription factor expression during metazoan embryonic development
AN Schep, B Adryan
PLoS One 8 (6), e66826, 2013
452013
INO80 chromatin remodeling coordinates metabolic homeostasis with cell division
GJ Gowans, AN Schep, KM Wong, DA King, WJ Greenleaf, AJ Morrison
Cell reports 22 (3), 611-623, 2018
352018
Identification and characterization of dynein genes in Tetrahymena
DE Wilkes, N Bennardo, CWC Chan, YL Chang, EO Corpuz, J DuMond, ...
Methods in cell biology 92, 11-30, 2009
62009
Characterization of an ultra-conserved putative cis-regulatory module at the mammalian telomerase reverse transcriptase gene
DA Tran, TC Wong, AN Schep, RA Drewell
DNA and cell biology 29 (9), 499-508, 2010
52010
Transcriptional repression by the proximal exonic region at the human TERT gene
TC Wong, ES Sokol, AN Schep, M Punjiya, DA Tran, D Allan, RA Drewell
Gene 486 (1-2), 65-73, 2011
32011
Pi-ATAC
X Chen, U Litzenburger, Y Wei, AN Schep, EL LaGory, H Choudhry, ...
2018
Transcription factor binding inference using V-plots
SK Denny, D Yang, CH Chuang, JJ Brady, JS Lim, BM Grüner, SH Chiou, ...
Patricia J. Gumport, Vice Provost for Graduate Education, 66, 2017
2017
Inferring transcription factor-associated accessibility variation from single-cell epigenomic data
AN Schep, B Wu, JD Buenrostro, WJ Greenleaf
Patricia J. Gumport, Vice Provost for Graduate Education, 72, 2017
2017
Methods for Inferring Nucleosome Positioning and Transcription Factor Binding
A Schep
Stanford University, 2017
2017
chromVAR: Inferring transcription factor variation from single-cell epigenomic data
AN Schep, B Wu, JD Buenrostro, WJ Greenleaf
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