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Dmitry Antipov
Dmitry Antipov
Visiting fellow, National Institutes of Health
Verified email at spbu.ru
Title
Cited by
Cited by
Year
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
211062012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
11562013
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current protocols in bioinformatics 70 (1), e102, 2020
11292020
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Research in Computational Molecular Biology: 17th Annual International …, 2013
7872013
Versatile genome assembly evaluation with QUAST-LG
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
Bioinformatics 34 (13), i142-i150, 2018
7282018
hybridSPAdes: an algorithm for hybrid assembly of short and long reads
D Antipov, A Korobeynikov, JS McLean, PA Pevzner
Bioinformatics 32 (7), 1009-1015, 2016
5052016
plasmidSPAdes: assembling plasmids from whole genome sequencing data
D Antipov, N Hartwick, M Shen, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 32 (22), 3380-3387, 2016
5002016
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
E Bushmanova, D Antipov, A Lapidus, AD Prjibelski
GigaScience 8 (9), giz100, 2019
4842019
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1782022
Metaviral SPAdes: assembly of viruses from metagenomic data
D Antipov, M Raiko, A Lapidus, PA Pevzner
Bioinformatics 36 (14), 4126-4129, 2020
1512020
Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 34: i142–i150
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
1512018
Research in computational molecular biology
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Proceedings of the 17th Annual International Conference, RECOMB 2013 …, 2013
1462013
492 Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, 493 Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and 494 its …
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
J Comput Biol 19, 455-77, 0
125
rnaQUAST: a quality assessment tool for de novo transcriptome assemblies
E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski
Bioinformatics 32 (14), 2210-2212, 2016
1232016
Thousands of previously unknown phages discovered in whole-community human gut metagenomes
S Benler, N Yutin, D Antipov, M Rayko, S Shmakov, AB Gussow, ...
Microbiome 9 (1), 1-17, 2021
1202021
Plasmid detection and assembly in genomic and metagenomic data sets
D Antipov, M Raiko, A Lapidus, PA Pevzner
Genome research 29 (6), 961-968, 2019
1122019
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ...
Nature communications 12 (1), 1044, 2021
882021
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner
Nature biotechnology 40 (7), 1075-1081, 2022
572022
Extending rnaSPAdes functionality for hybrid transcriptome assembly
AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ...
BMC bioinformatics 21 (12), 1-9, 2020
302020
Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly
SK Pham, D Antipov, A Sirotkin, G Tesler, PA Pevzner, MA Alekseyev
Journal of Computational Biology 20 (4), 359-371, 2013
282013
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