| Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing B Wang, E Tseng, M Regulski, TA Clark, T Hon, Y Jiao, Z Lu, A Olson, ... Nature communications 7 (1), 11708, 2016 | 559 | 2016 |
| De novo assembly of the cattle reference genome with single-molecule sequencing BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ... Gigascience 9 (3), giaa021, 2020 | 490 | 2020 |
| Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing SP Gordon, E Tseng, A Salamov, J Zhang, X Meng, Z Zhao, D Kang, ... PloS one 10 (7), e0132628, 2015 | 377 | 2015 |
| An improved pig reference genome sequence to enable pig genetics and genomics research A Warr, N Affara, B Aken, H Beiki, DM Bickhart, K Billis, W Chow, L Eory, ... Gigascience 9 (6), giaa051, 2020 | 247 | 2020 |
| Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ... Genome research 28 (8), 1126-1135, 2018 | 185 | 2018 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... Nature biotechnology 40 (5), 711-719, 2022 | 148 | 2022 |
| Androgen receptor variant AR-V9 is coexpressed with AR-V7 in prostate cancer metastases and predicts abiraterone resistance M Kohli, Y Ho, DW Hillman, JL Van Etten, C Henzler, R Yang, JM Sperger, ... Clinical Cancer Research 23 (16), 4704-4715, 2017 | 142 | 2017 |
| Universal alternative splicing of noncoding exons IW Deveson, ME Brunck, J Blackburn, E Tseng, T Hon, TA Clark, MB Clark, ... Cell Systems 6 (2), 245-255. e5, 2018 | 141 | 2018 |
| Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human RI Kuo, E Tseng, L Eory, IR Paton, AL Archibald, DW Burt BMC genomics 18, 1-19, 2017 | 133 | 2017 |
| Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle WY Low, R Tearle, R Liu, S Koren, A Rhie, DM Bickhart, BD Rosen, ... Nature communications 11 (1), 2071, 2020 | 114 | 2020 |
| Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing JL Weirather, PT Afshar, TA Clark, E Tseng, LS Powers, JG Underwood, ... Nucleic acids research 43 (18), e116-e116, 2015 | 112 | 2015 |
| Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing SK Leung, AR Jeffries, I Castanho, BT Jordan, K Moore, JP Davies, ... Cell reports 37 (7), 2021 | 108 | 2021 |
| Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing SY Anvar, G Allard, E Tseng, GM Sheynkman, E de Klerk, M Vermaat, ... Genome biology 19, 1-18, 2018 | 108 | 2018 |
| A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing B Wang, M Regulski, E Tseng, A Olson, S Goodwin, WR McCombie, ... Genome research 28 (6), 921-932, 2018 | 91 | 2018 |
| Enterolignan-producing phenotypes are associated with increased gut microbial diversity and altered composition in premenopausal women in the United States MAJ Hullar, SM Lancaster, F Li, E Tseng, K Beer, C Atkinson, K Wähälä, ... Cancer Epidemiology, Biomarkers & Prevention 24 (3), 546-554, 2015 | 79 | 2015 |
| Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris RE Workman, AM Myrka, GW Wong, E Tseng, KC Welch Jr, W Timp Gigascience 7 (3), giy009, 2018 | 75 | 2018 |
| Long-read sequencing of chicken transcripts and identification of new transcript isoforms S Thomas, JG Underwood, E Tseng, AK Holloway, ... PloS one 9 (4), e94650, 2014 | 66 | 2014 |
| Transcriptional fates of human-specific segmental duplications in brain ML Dougherty, JG Underwood, BJ Nelson, E Tseng, KM Munson, O Penn, ... Genome research 28 (10), 1566-1576, 2018 | 65 | 2018 |
| RNA-seq data science: From raw data to effective interpretation D Deshpande, K Chhugani, Y Chang, A Karlsberg, C Loeffler, J Zhang, ... Frontiers in Genetics 14, 997383, 2023 | 56 | 2023 |
| Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato M Petek, M Zagorščak, Ž Ramšak, S Sanders, Š Tomaž, E Tseng, ... Scientific data 7 (1), 249, 2020 | 38 | 2020 |
