| The database of interacting proteins: 2004 update L Salwinski, CS Miller, AJ Smith, FK Pettit, JU Bowie, D Eisenberg Nucleic acids research 32 (suppl 1), D449-D451, 2004 | 2595 | 2004 |
| The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ... PLoS Biol 5 (3), e16, 2007 | 1017 | 2007 |
| Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla KC Wrighton, BC Thomas, I Sharon, CS Miller, CJ Castelle, ... Science 337 (6102), 1661-1665, 2012 | 666 | 2012 |
| The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples SJ Williamson, DB Rusch, S Yooseph, AL Halpern, KB Heidelberg, ... PLoS One 3 (1), e1456, 2008 | 420 | 2008 |
| EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data CS Miller, BJ Baker, BC Thomas, SW Singer, JF Banfield Genome Biol 12 (5), R44, 2011 | 388 | 2011 |
| Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants B Brooks, BA Firek, CS Miller, I Sharon, BC Thomas, R Baker, ... Microbiome 2 (1), 1, 2014 | 302 | 2014 |
| Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions JC Angle, TH Morin, LM Solden, AB Narrowe, GJ Smith, MA Borton, ... Nature Communications 8 (1), 1567, 2017 | 258 | 2017 |
| Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments CS Miller, KM Handley, KC Wrighton, KR Frischkorn, BC Thomas, ... PloS one 8 (2), e56018, 2013 | 218 | 2013 |
| Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy D Cruz, AD Watson, CS Miller, D Montoya, MT Ochoa, PA Sieling, ... The Journal of clinical investigation 118 (8), 2917-2928, 2008 | 190 | 2008 |
| Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure AB Narrowe, M Albuthi-Lantz, EP Smith, KJ Bower, TM Roane, AM Vajda, ... Microbiome 3 (1), 6, 2015 | 164 | 2015 |
| Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass JM Gladden, M Allgaier, CS Miller, TC Hazen, JS VanderGheynst, ... Applied and environmental microbiology 77 (16), 5804-5812, 2011 | 126 | 2011 |
| Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community KM Handley, NC VerBerkmoes, CI Steefel, KH Williams, I Sharon, ... The ISME Journal, 2012 | 120 | 2012 |
| High‐resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils AB Narrowe, JC Angle, RA Daly, KC Stefanik, KC Wrighton, CS Miller Environmental microbiology 19 (6), 2192-2209, 2017 | 68 | 2017 |
| Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities. NB Justice, C Pan, R Mueller, SE Spaulding, V Shah, CL Sun, AP Yelton, ... Applied and environmental microbiology, 2012 | 62 | 2012 |
| Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acid mine drainage AC Mosier, C Miller, K Frischkorn, R Ohm, Z Li, K LaButti, A Lapidus, ... Frontiers in Microbiology 7, 238, 2016 | 59 | 2016 |
| Using inferred residue contacts to distinguish between correct and incorrect protein models CS Miller, D Eisenberg Bioinformatics 24 (14), 1575-1582, 2008 | 57 | 2008 |
| Complex evolutionary history of translation Elongation Factor 2 and diphthamide biosynthesis in Archaea and parabasalids AB Narrowe, A Spang, CW Stairs, EF Caceres, BJ Baker, CS Miller, ... Genome biology and evolution 10 (9), 2380-2393, 2018 | 45 | 2018 |
| Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points KM Handley, KC Wrighton, CS Miller, MJ Wilkins, RS Kantor, BC Thomas, ... Environmental Microbiology, 2014 | 43 | 2014 |
| Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem K Andrade, J Logemann, KB Heidelberg, JB Emerson, LR Comolli, ... The ISME journal, 2015 | 40 | 2015 |
| A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity K Fujishima, J Sugahara, CS Miller, BJ Baker, M Di Giulio, K Takesue, ... Nucleic acids research 39 (22), 9695-9704, 2011 | 36 | 2011 |
